Annotation of co-expression genes

PH01004076G0010's details annotation

1.Annotation

ICBR annotation: phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed

Blast result AT1G22940 : 0.00E+00
Blast annotation: thiamin biosynthesis protein, putative

2.Location

Scaffold: PH01004076
Strand: +

RegionStartEnd
gene664311546
mRNA664311546
exon66437256
exon73537427
exon83168391
exon84848559
exon86818815
exon93589422
exon95239650
exon1057910835
exon1091211372
exon1148411546
CDS68227256
CDS73537427
CDS83168391
CDS84848559
CDS86818815
CDS93589422
CDS95239650
CDS1057910835
CDS1091211372
CDS1148411494

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08543.11Phos_pyr_kin108352
PF02581.16TMP-TENI382567

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Thiamine metabolismhydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase /thiamine-phosphate diphosphorylase[EC:2.7.1.49;EC:2.7.4.7;EC:2.5.1.3]ko00730K14153

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004789thiamine-phosphate diphosphorylase activity
GO:0008972phosphomethylpyrimidine kinase activity
GO:0009228thiamine biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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