PH01004097G0070's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT1G08810 : 2.40E-43
Blast annotation: myb domain protein 60
2.Location
Scaffold: PH01004097
Strand: +
| Region | Start | End |
| gene | 48425 | 50215 |
| mRNA | 48425 | 50215 |
| exon | 48425 | 48789 |
| exon | 48975 | 49104 |
| exon | 49447 | 50215 |
| CDS | 48771 | 48789 |
| CDS | 48975 | 49104 |
| CDS | 49447 | 50041 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000396 | Steroid_hormone_biosynthesis Drug_metabolism_-_other_enzymes Pentose_and_glucuronate_interconversions Retinol_metabolism Drug_metabolism_-_cytochrome_P450 Ascorbate_and_aldarate_metabolism Metabolism_of_xenobiotics_by_cytochrome_P450 Porphyrin_and_chlorophyll_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 29 | 74 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.