Annotation of co-expression genes

PH01004097G0110's details annotation

1.Annotation

ICBR annotation: actin polymerization factor, putative, expressed

Blast result AT4G01710 : 1.40E-33
Blast annotation: ARP2/3 complex 16 kDa subunit (p16-Arc)

2.Location

Scaffold: PH01004097
Strand: -

RegionStartEnd
gene9010791597
mRNA9010791597
exon9010790977
exon9109091162
exon9124891597
CDS9087390977
CDS9109091162
CDS9124891348

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000388HMG Transcription_Regulator(from iTAK)
cytoskeleton,
regulation of actin filament polymerization,
Pentose_and_glucuronate_interconversions
Metabolism_of_xenobiotics_by_cytochrome_P450
acid-amino acid ligase activity,
Ubiquitin_mediated_proteolysis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04699.13P16-Arc1492

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005856cytoskeleton
GO:0030833regulation of actin filament polymerization

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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