PH01004099G0020's details annotation
1.Annotation
ICBR annotation: calcium-binding mitochondrial protein anon-60Da, putative, expressed
Blast result AT3G59820 : 6.70E-86
Blast annotation: LETM1-like protein
2.Location
Scaffold: PH01004099
Strand: +
| Region | Start | End |
| gene | 17026 | 22663 |
| mRNA | 17026 | 22663 |
| exon | 17026 | 17769 |
| exon | 17910 | 17953 |
| exon | 18144 | 18290 |
| exon | 18397 | 18485 |
| exon | 18537 | 18651 |
| exon | 20345 | 20409 |
| exon | 20497 | 20668 |
| exon | 21601 | 21816 |
| exon | 21973 | 22020 |
| exon | 22141 | 22287 |
| exon | 22380 | 22663 |
| CDS | 17547 | 17769 |
| CDS | 17910 | 17953 |
| CDS | 18144 | 18290 |
| CDS | 18397 | 18485 |
| CDS | 18537 | 18651 |
| CDS | 20345 | 20409 |
| CDS | 20497 | 20668 |
| CDS | 21601 | 21816 |
| CDS | 21973 | 22020 |
| CDS | 22141 | 22287 |
| CDS | 22380 | 22397 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07766.12 | LETM1 | 90 | 184 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.