PH01004105G0040's details annotation
1.Annotation
ICBR annotation: zinc finger protein-related, putative, expressed
Blast result AT2G35330 : 2.40E-74
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01004105
Strand: +
| Region | Start | End |
| gene | 38378 | 43019 |
| mRNA | 38378 | 43019 |
| exon | 38378 | 39936 |
| exon | 41562 | 41597 |
| exon | 41861 | 43019 |
| CDS | 38983 | 39936 |
| CDS | 41562 | 41597 |
| CDS | 41861 | 42382 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13920.5 | zf-C3HC4_3 | 446 | 493 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.