PH01004122G0140's details annotation
1.Annotation
ICBR annotation: SKP1, putative, expressed
Blast result AT3G61415 : 1.50E-97
Blast annotation: SKP1-like 21
2.Location
Scaffold: PH01004122
Strand: -
| Region | Start | End |
| gene | 92643 | 94581 |
| mRNA | 92643 | 94581 |
| exon | 92643 | 92766 |
| exon | 93099 | 93185 |
| exon | 93279 | 93389 |
| exon | 93459 | 93650 |
| exon | 93977 | 94201 |
| exon | 94323 | 94581 |
| CDS | 92752 | 92766 |
| CDS | 93099 | 93185 |
| CDS | 93279 | 93389 |
| CDS | 93459 | 93650 |
| CDS | 93977 | 94201 |
| CDS | 94323 | 94358 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000572 | ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001009 | |
| coexpression network | CFinderM001203 | SNARE_interactions_in_vesicular_transport ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01466.18 | Skp1 | 117 | 154 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.