PH01004129G0090's details annotation
1.Annotation
ICBR annotation: no apical meristem protein, putative, expressed
Blast result AT4G29230 : 9.80E-88
Blast annotation: NAC domain containing protein 75
2.Location
Scaffold: PH01004129
Strand: -
| Region | Start | End |
| gene | 58225 | 65560 |
| mRNA | 58225 | 65560 |
| exon | 58225 | 59194 |
| exon | 60425 | 60486 |
| exon | 60791 | 60882 |
| exon | 61221 | 61297 |
| exon | 62124 | 62411 |
| exon | 62995 | 63028 |
| exon | 63713 | 64115 |
| exon | 64742 | 64925 |
| exon | 65051 | 65560 |
| CDS | 59063 | 59194 |
| CDS | 60425 | 60486 |
| CDS | 60791 | 60882 |
| CDS | 61221 | 61297 |
| CDS | 62124 | 62411 |
| CDS | 62995 | 63028 |
| CDS | 63713 | 64115 |
| CDS | 64742 | 64925 |
| CDS | 65051 | 65188 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NAC |
| Transcription_Regulator(from PlantTFDB) | NAC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02365.14 | NAM | 52 | 218 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.