PH01004130G0110's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G06536 : 2.40E-33
Blast annotation: SPla/RYanodine receptor (SPRY) domain-containing protein
2.Location
Scaffold: PH01004130
Strand: -
| Region | Start | End |
| gene | 53063 | 55469 |
| mRNA | 53063 | 55469 |
| exon | 53063 | 54129 |
| exon | 54221 | 54527 |
| exon | 54786 | 55469 |
| CDS | 53602 | 54129 |
| CDS | 54221 | 54527 |
| CDS | 54786 | 55186 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001240 | |
| coexpression network | CFinderM001241 | translational initiation, RNA_transport |
| coexpression network | CFinderM001653 | WNK_NRBP (from iTAK) RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.