PH01004135G0020's details annotation
1.Annotation
ICBR annotation: glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Blast result AT1G11820 : 9.00E-148
Blast annotation: O-Glycosyl hydrolases family 17 protein
2.Location
Scaffold: PH01004135
Strand: +
| Region | Start | End |
| gene | 9950 | 16613 |
| mRNA | 9950 | 16613 |
| exon | 9950 | 10659 |
| exon | 10883 | 10928 |
| exon | 11008 | 12218 |
| exon | 13709 | 13807 |
| exon | 14485 | 14532 |
| exon | 15754 | 15781 |
| exon | 16326 | 16613 |
| CDS | 10569 | 10659 |
| CDS | 10883 | 10928 |
| CDS | 11008 | 12218 |
| CDS | 13709 | 13807 |
| CDS | 14485 | 14532 |
| CDS | 15754 | 15781 |
| CDS | 16326 | 16512 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001276 | GT8 GlycosylTransferases plant-type cell wall organization, extracellular region, |
| coexpression network | CFinderM001277 | plant-type cell wall organization, Ether_lipid_metabolism Glycerophospholipid_metabolism Endocytosis extracellular region, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00332.17 | Glyco_hydro_17 | 57 | 354 |
| PF07983.12 | X8 | 372 | 443 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.