PH01004139G0050's details annotation
1.Annotation
ICBR annotation: NBS-LRR disease resistance protein, putative
Blast result AT3G14460 : 9.50E-34
Blast annotation: LRR and NB-ARC domains-containing disease resistance protein
2.Location
Scaffold: PH01004139
Strand: +
| Region | Start | End |
| gene | 43730 | 50490 |
| mRNA | 43730 | 50490 |
| exon | 43730 | 44598 |
| exon | 45647 | 46078 |
| exon | 48044 | 48805 |
| exon | 49377 | 50490 |
| CDS | 44338 | 44598 |
| CDS | 45647 | 46078 |
| CDS | 48044 | 48805 |
| CDS | 49377 | 49472 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14223.5 | Retrotran_gag_2 | 106 | 233 |
| PF00931.21 | NB-ARC | 236 | 457 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.