PH01004152G0020's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT4G01990 : 1.30E-71
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01004152
Strand: -
| Region | Start | End |
| gene | 13079 | 14665 |
| mRNA | 13079 | 14665 |
| exon | 13079 | 14665 |
| CDS | 13435 | 14649 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000188 | ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001342 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13812.5 | PPR_3 | 42 | 88 |
| PF13181.5 | TPR_8 | 149 | 174 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.