Gene details

Annotation of co-expression genes

PH01004184G0100's details annotation

1.Annotation

ICBR annotation: gamma response I protein, putative, expressed

Blast result AT3G52120 : 2.20E-66
Blast annotation: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein

2.Location

Scaffold: PH01004184
Strand: +

Region	Start	End
gene	75250	85109
mRNA	75250	85109
exon	75250	77060
exon	78094	78220
exon	78384	78450
exon	78571	78717
exon	79093	79258
exon	79348	79530
exon	80267	80385
exon	80807	81352
exon	82123	82375
exon	82965	83155
exon	84924	85109
CDS	76694	77060
CDS	78094	78220
CDS	78384	78450
CDS	78571	78717
CDS	79093	79258
CDS	79348	79530
CDS	80267	80385
CDS	80807	81352
CDS	82123	82375
CDS	82965	83155
CDS	84924	85052

UCSC genome browser

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	null	null

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF01805.19	Surp	137	184
PF03732.16	Retrotrans_gag	402	490

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0003723	RNA binding
GO:0006396	RNA processing

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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