PH01004186G0090's details annotation
1.Annotation
ICBR annotation: tesmin/TSO1-like CXC domain containing protein, expressed
Blast result AT4G29000 : 6.60E-77
Blast annotation: Tesmin/TSO1-like CXC domain-containing protein
2.Location
Scaffold: PH01004186
Strand: +
| Region | Start | End |
| gene | 51249 | 61489 |
| mRNA | 51249 | 61489 |
| exon | 51249 | 54139 |
| exon | 54899 | 54982 |
| exon | 55709 | 55886 |
| exon | 57341 | 57697 |
| exon | 57915 | 58003 |
| exon | 58626 | 58729 |
| exon | 59135 | 59512 |
| exon | 59790 | 59842 |
| exon | 60068 | 61489 |
| CDS | 53979 | 54139 |
| CDS | 54899 | 54982 |
| CDS | 55709 | 55886 |
| CDS | 57341 | 57697 |
| CDS | 57915 | 58003 |
| CDS | 58626 | 58729 |
| CDS | 59135 | 59512 |
| CDS | 59790 | 59842 |
| CDS | 60068 | 60151 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000136 | CPP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | CPP |
| Transcription_Regulator(from PlantTFDB) | CPP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03638.14 | TCR | 69 | 104 |
| PF03638.14 | TCR | 155 | 190 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.