Annotation of co-expression genes

PH01004200G0050's details annotation

1.Annotation

ICBR annotation: OsFBO14 - F-box and other domain containing protein, expressed

Blast result AT1G78280 : 0.00E+00
Blast annotation: transferases, transferring glycosyl groups

2.Location

Scaffold: PH01004200
Strand: -

RegionStartEnd
gene1512423541
mRNA1512423541
exon1512415369
exon1592116095
exon1637716560
exon1664016724
exon1720717443
exon1753017837
exon1790917989
exon1862818750
exon1890119485
exon1957919678
exon2143221631
exon2170321900
exon2260522634
exon2328423541
CDS1518615369
CDS1592116095
CDS1637716560
CDS1664016724
CDS1720717443
CDS1753017837
CDS1790917989
CDS1862818750
CDS1890119485
CDS1957919678
CDS2143221631
CDS2170321900
CDS2260522634
CDS2328423415

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)Jumonji

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13621.5Cupin_855271
PF01636.22APH570784

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.