PH01004212G0120's details annotation
1.Annotation
ICBR annotation: receptor protein kinase CLAVATA1 precursor, putative, expressed
Blast result AT3G47580 : 1.10E-42
Blast annotation: Leucine-rich repeat protein kinase family protein
2.Location
Scaffold: PH01004212
Strand: +
| Region | Start | End |
| gene | 69027 | 74597 |
| mRNA | 69027 | 74597 |
| exon | 69027 | 69112 |
| exon | 69946 | 70344 |
| exon | 71544 | 71551 |
| exon | 72828 | 72906 |
| exon | 72944 | 73018 |
| exon | 73100 | 73466 |
| exon | 74024 | 74597 |
| CDS | 69064 | 69112 |
| CDS | 69946 | 70344 |
| CDS | 71544 | 71551 |
| CDS | 72828 | 72906 |
| CDS | 72944 | 73018 |
| CDS | 73100 | 73466 |
| CDS | 74024 | 74258 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 31 | 150 |
| PF00069.24 | Pkinase | 192 | 310 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.