Annotation of co-expression genes

PH01004235G0050's details annotation

1.Annotation

ICBR annotation: histidine kinase, putative, expressed

Blast result AT1G27320 : 0.00E+00
Blast annotation: histidine kinase 3

2.Location

Scaffold: PH01004235
Strand: +

RegionStartEnd
gene6852973787
mRNA6852973787
exon6852969861
exon6993570210
exon7054470710
exon7079671005
exon7112271308
exon7139171442
exon7152371752
exon7207273180
exon7328073787
CDS6946369861
CDS6993570210
CDS7054470710
CDS7079671005
CDS7112271308
CDS7139171442
CDS7152371752
CDS7207273180
CDS7328073538

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)Others

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03924.12CHASE130322
PF00512.24HisKA410475
PF02518.25HATPase_c507652
PF00072.23Response_reg820890

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Plant hormone signal transductionarabidopsis histidine kinase 2/3/4 (cytokinin receptor) [EC:2.-.-.-]ko04075K14489

10.Gene Ontology

GO AccessionGO Annotation
GO:0000155phosphorelay sensor kinase activity
GO:0000156phosphorelay response regulator activity
GO:0000160phosphorelay signal transduction system
GO:0004871signal transducer activity
GO:0005524ATP binding
GO:0006355regulation of transcription, DNA-dependent
GO:0007165signal transduction
GO:0016020membrane
GO:0016310phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.