PH01004244G0060's details annotation
1.Annotation
ICBR annotation: CAPIP1, putative, expressed
Blast result AT5G53160 : 4.30E-77
Blast annotation: regulatory components of ABA receptor 3
2.Location
Scaffold: PH01004244
Strand: -
| Region | Start | End |
| gene | 56097 | 60934 |
| mRNA | 56097 | 60934 |
| exon | 56097 | 56930 |
| exon | 58609 | 58824 |
| exon | 60071 | 60934 |
| CDS | 56715 | 56930 |
| CDS | 58609 | 58824 |
| CDS | 60071 | 60259 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10604.8 | Polyketide_cyc2 | 50 | 193 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | abscisic acid receptor PYR/PYL family | ko04075 | K14496 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.