Annotation of co-expression genes

PH01004255G0200's details annotation

1.Annotation

ICBR annotation: HIRAN domain containing protein, putative, expressed

Blast result AT5G07400 : 3.70E-66
Blast annotation: forkhead-associated domain-containing protein / FHA domain-containing protein

2.Location

Scaffold: PH01004255
Strand: -

RegionStartEnd
gene96113102287
mRNA96113102287
exon9611396198
exon9626896434
exon9658196634
exon9710697394
exon9753797740
exon9792397968
exon98063102287
CDS9612496198
CDS9626896434
CDS9658196634
CDS9710697394
CDS9753797740
CDS9792397968
CDS9806398607

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000633Aminoacyl-tRNA_biosynthesis
histone_lysine_methylation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06087.11Tyr-DNA_phospho153359
PF08797.10HIRAN362434

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0005634nucleus
GO:0006281DNA repair
GO:0008081phosphoric diester hydrolase activity
GO:0008270zinc ion binding
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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