Annotation of co-expression genes

PH01004270G0030's details annotation

1.Annotation

ICBR annotation: proteasome/cyclosome repeat containing protein, expressed

Blast result AT2G20580 : 0.00E+00
Blast annotation: 26S proteasome regulatory subunit S2 1A

2.Location

Scaffold: PH01004270
Strand: +

RegionStartEnd
gene1028722041
mRNA1028722041
exon1028711345
exon1144311543
exon1239212512
exon1259812657
exon1310113168
exon1404614088
exon1450314568
exon1473414772
exon1486014942
exon1497215158
exon1524115321
exon1550215660
exon1575815865
exon1593516039
exon1612516265
exon1635516459
exon1653816759
exon1826318568
exon1929919412
exon1951619731
exon2022820287
exon2036720480
exon2058520670
exon2076020868
exon2095521133
exon2121022041
CDS1121411345
CDS1144311543
CDS1239212512
CDS1259812657
CDS1310113168
CDS1404614088
CDS1450314568
CDS1473414772
CDS1486014942
CDS1497215158
CDS1524115321
CDS1550215660
CDS1575815865
CDS1593516039
CDS1612516265
CDS1635516459
CDS1653816759
CDS1826318568
CDS1929919412
CDS1951619731
CDS2022820287
CDS2036720480
CDS2058520670
CDS2076020868
CDS2095521133
CDS2121021282

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01851.21PC_rep480515
PF01851.21PC_rep517548

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Proteasome26S proteasome regulatory subunit N1ko03051K03028

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0000502proteasome complex
GO:0005488binding
GO:0030234enzyme regulator activity
GO:0042176regulation of protein catabolic process
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.