PH01004272G0160's details annotation
1.Annotation
ICBR annotation: lysM domain-containing GPI-anchored protein precursor, putative, expressed
Blast result AT2G17120 : 5.70E-49
Blast annotation: lysm domain GPI-anchored protein 2 precursor
2.Location
Scaffold: PH01004272
Strand: -
| Region | Start | End |
| gene | 95033 | 97990 |
| mRNA | 95033 | 97990 |
| exon | 95033 | 95303 |
| exon | 95395 | 95582 |
| exon | 95669 | 95826 |
| exon | 96252 | 96331 |
| exon | 96650 | 97990 |
| CDS | 95209 | 95303 |
| CDS | 95395 | 95582 |
| CDS | 95669 | 95826 |
| CDS | 96252 | 96331 |
| CDS | 96650 | 97295 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01476.19 | LysM | 106 | 152 |
| PF01476.19 | LysM | 170 | 213 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016998 | cell wall macromolecule catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.