PH01004280G0050's details annotation
1.Annotation
ICBR annotation: tetraspanin family protein, putative, expressed
Blast result AT1G32400 : 2.50E-82
Blast annotation: tobamovirus multiplication 2A
2.Location
Scaffold: PH01004280
Strand: +
| Region | Start | End |
| gene | 29247 | 30277 |
| mRNA | 29247 | 30277 |
| exon | 29247 | 29697 |
| exon | 30008 | 30277 |
| CDS | 29447 | 29697 |
| CDS | 30008 | 30116 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001120 | Valine,_leucine_and_isoleucine_biosynthesis Glycine,_serine_and_threonine_metabolism isoleucine biosynthetic process, L-threonine ammonia-lyase activity, cellular amino acid metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00335.19 | Tetraspannin | 10 | 141 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.