Annotation of co-expression genes

PH01004288G0050's details annotation

1.Annotation

ICBR annotation: CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed

Blast result AT1G01140 : 0.00E+00
Blast annotation: CBL-interacting protein kinase 9

2.Location

Scaffold: PH01004288
Strand: +

RegionStartEnd
gene2564537241
mRNA2564537241
exon2564528105
exon2863128693
exon2878228853
exon2901129118
exon2922229302
exon2951629569
exon2966029785
exon2986829957
exon3012930251
exon3057730687
exon3101031141
exon3123231288
exon3146831542
exon3165231728
exon3178431878
exon3397134870
exon3500235108
exon3560137241
CDS2792028105
CDS2863128693
CDS2878228853
CDS2901129118
CDS2922229302
CDS2951629569
CDS2966029785
CDS2986829957
CDS3012930251
CDS3057730687
CDS3101031141
CDS3123231288
CDS3146831542
CDS3165231728
CDS3178431878
CDS3397134870
CDS3500235108
CDS3560136224

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase18273
PF03822.13NAF312373
PF00078.26RVT_1570775
PF13966.5zf-RVT863947

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0003964RNA-directed DNA polymerase activity
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006278RNA-dependent DNA replication
GO:0006468protein phosphorylation
GO:0007165signal transduction
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.