PH01004288G0070's details annotation
1.Annotation
ICBR annotation: heavy metal-associated domain containing protein, expressed
Blast result AT1G01490 : 2.00E-17
Blast annotation: Heavy metal transport/detoxification superfamily protein
2.Location
Scaffold: PH01004288
Strand: -
| Region | Start | End |
| gene | 43234 | 46899 |
| mRNA | 43234 | 46899 |
| exon | 43234 | 44177 |
| exon | 44302 | 44377 |
| exon | 45158 | 45454 |
| exon | 46193 | 46899 |
| CDS | 43612 | 44177 |
| CDS | 44302 | 44377 |
| CDS | 45158 | 45454 |
| CDS | 46193 | 46570 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000532 | glucose metabolic process, glucose-6-phosphate dehydrogenase activity, Glutathione_metabolism Pentose_phosphate_pathway NADP binding, |
| coexpression network | CFinderM000976 | acid-amino acid ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.