Annotation of co-expression genes

PH01004294G0010's details annotation

1.Annotation

ICBR annotation: calcium-transporting ATPase, plasma membrane-type, putative, expressed

Blast result AT5G57110 : 5.00E-128
Blast annotation: autoinhibited Ca2+ -ATPase, isoform 8

2.Location

Scaffold: PH01004294
Strand: -

RegionStartEnd
gene52011140
mRNA52011140
exon5201166
exon14141455
exon15241583
exon20652229
exon23002410
exon44344580
exon46114676
exon61846321
exon65916674
exon67576831
exon70257133
exon72087290
exon73877470
exon76477718
exon91749305
exon93939468
exon991511140
CDS11461166
CDS14141455
CDS15241583
CDS20652229
CDS23002410
CDS44344580
CDS46114676
CDS61846321
CDS65916674
CDS67576831
CDS70257133
CDS72087290
CDS73877470
CDS76477718
CDS91749305
CDS93939468
CDS991510039

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00122.19E1-E2_ATPase107197
PF13246.5Cation_ATPase325419

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0006812cation transport
GO:0016021integral to membrane
GO:0019829cation-transporting ATPase activity
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.