PH01004307G0060's details annotation
1.Annotation
ICBR annotation: alpha-N-arabinofuranosidase A, putative, expressed
Blast result AT3G10740 : 6.60E-34
Blast annotation: alpha-L-arabinofuranosidase 1
2.Location
Scaffold: PH01004307
Strand: +
| Region | Start | End |
| gene | 28057 | 30750 |
| mRNA | 28057 | 30750 |
| exon | 28057 | 28187 |
| exon | 29478 | 29593 |
| exon | 29896 | 30017 |
| exon | 30114 | 30750 |
| CDS | 28136 | 28187 |
| CDS | 29478 | 29593 |
| CDS | 29896 | 30017 |
| CDS | 30114 | 30321 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02018.16 | CBM_4_9 | 47 | 128 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.