Annotation of co-expression genes

PH01004308G0070's details annotation

1.Annotation

ICBR annotation: NAD dependent epimerase/dehydratase family protein, putative, expressed

Blast result AT5G28840 : 0.00E+00
Blast annotation: GDP-D-mannose 3,5-epimerase

2.Location

Scaffold: PH01004308
Strand: +

RegionStartEnd
gene7213876998
mRNA7213876998
exon7213873049
exon7408474177
exon7427574404
exon7449674628
exon7629076497
exon7658576998
CDS7265573049
CDS7408474177
CDS7427574404
CDS7449674628
CDS7629076497
CDS7658576740

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000485Ascorbate_and_aldarate_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
cellular metabolic process,
coenzyme binding,
ARF Transcription_Regulator(from PlantTFDB)
B3-ARF Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01370.20Epimerase25264

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ascorbate and aldarate metabolismGDP-D-mannose 3', 5'-epimerase [EC:5.1.3.18;EC:5.1.3.-]ko00053K10046
Amino sugar and nucleotide sugar metabolismGDP-D-mannose 3', 5'-epimerase [EC:5.1.3.18;EC:5.1.3.-]ko00520K10046

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0044237cellular metabolic process
GO:0050662coenzyme binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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