PH01004320G0060's details annotation
1.Annotation
ICBR annotation: CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Blast result AT2G26980 : 1.00E-126
Blast annotation: CBL-interacting protein kinase 3
2.Location
Scaffold: PH01004320
Strand: -
| Region | Start | End |
| gene | 42516 | 46489 |
| mRNA | 42516 | 46489 |
| exon | 42516 | 43344 |
| exon | 43569 | 43643 |
| exon | 43719 | 43775 |
| exon | 43911 | 44024 |
| exon | 44419 | 44529 |
| exon | 44642 | 44764 |
| exon | 44990 | 45079 |
| exon | 45165 | 45290 |
| exon | 45390 | 45443 |
| exon | 45604 | 45792 |
| exon | 46060 | 46489 |
| CDS | 43267 | 43344 |
| CDS | 43569 | 43643 |
| CDS | 43719 | 43775 |
| CDS | 43911 | 44024 |
| CDS | 44419 | 44529 |
| CDS | 44642 | 44764 |
| CDS | 44990 | 45079 |
| CDS | 45165 | 45290 |
| CDS | 45390 | 45443 |
| CDS | 45604 | 45792 |
| CDS | 46060 | 46248 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 98 | 229 |
| PF03822.13 | NAF | 269 | 328 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0007165 | signal transduction |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.