Annotation of co-expression genes

PH01004328G0130's details annotation

1.Annotation

ICBR annotation: potyvirus VPg interacting protein, putative, expressed

Blast result AT5G48160 : 0.00E+00
Blast annotation: Protein of unknown function (DUF1423)

2.Location

Scaffold: PH01004328
Strand: +

RegionStartEnd
gene9334297842
mRNA9334297842
exon9334294674
exon9627197842
CDS9349894674
CDS9627196878

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000447CMGC_MAPK (from iTAK)
C3H Transcription_Regulator(from PlantTFDB)
ubiquitin ligase complex,
extracellular region,
coexpression networkCFinderM000986CMGC_MAPK (from iTAK)
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07227.10PHD_Oberon226349
PF16312.4Oberon_cc443578

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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