Annotation of co-expression genes

PH01004366G0040's details annotation

1.Annotation

ICBR annotation: DDT domain containing protein, putative, expressed

Blast result AT5G44180 : 1.30E-31
Blast annotation: Homeodomain-like transcriptional regulator

2.Location

Scaffold: PH01004366
Strand: -

RegionStartEnd
gene2063323307
mRNA2063323307
exon2063321661
exon2191322443
exon2255923307
CDS2159721661
CDS2191322443
CDS2255922604

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)HB-other
Transcription_Regulator(from PlantTFDB)HB-other

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00046.28Homeobox352

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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