Annotation of co-expression genes

PH01004399G0090's details annotation

1.Annotation

ICBR annotation: bZIP transcription factor family protein, putative, expressed

Blast result AT3G58120 : 2.90E-38
Blast annotation: Basic-leucine zipper (bZIP) transcription factor family protein

2.Location

Scaffold: PH01004399
Strand: +

RegionStartEnd
gene6656269931
mRNA6656269931
exon6656267651
exon6796868058
exon6833868464
exon6928969931
CDS6756367651
CDS6796868058
CDS6833868464
CDS6928969443

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)bZIP
Transcription_Regulator(from PlantTFDB)bZIP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00170.20bZIP_13375

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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