PH01004403G0040's details annotation
1.Annotation
ICBR annotation: OsSCP5 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT3G07990 : 0.00E+00
Blast annotation: serine carboxypeptidase-like 27
2.Location
Scaffold: PH01004403
Strand: -
| Region | Start | End |
| gene | 12924 | 16840 |
| mRNA | 12924 | 16840 |
| exon | 12924 | 13508 |
| exon | 13594 | 13699 |
| exon | 14116 | 14211 |
| exon | 14301 | 14428 |
| exon | 15356 | 15616 |
| exon | 15706 | 15791 |
| exon | 15891 | 16025 |
| exon | 16082 | 16177 |
| exon | 16290 | 16840 |
| CDS | 13365 | 13508 |
| CDS | 13594 | 13699 |
| CDS | 14116 | 14211 |
| CDS | 14301 | 14428 |
| CDS | 15356 | 15616 |
| CDS | 15706 | 15791 |
| CDS | 15891 | 16025 |
| CDS | 16082 | 16177 |
| CDS | 16290 | 16641 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000932 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 33 | 461 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.