PH01004432G0030's details annotation
1.Annotation
ICBR annotation: disease resistance protein RPM1, putative
Blast result AT3G07040 : 1.10E-65
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01004432
Strand: +
| Region | Start | End |
| gene | 12801 | 21831 |
| mRNA | 12801 | 21831 |
| exon | 12801 | 14308 |
| exon | 16394 | 16855 |
| exon | 17048 | 17139 |
| exon | 21406 | 21831 |
| CDS | 12931 | 14308 |
| CDS | 16394 | 16855 |
| CDS | 17048 | 17139 |
| CDS | 21406 | 21738 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000977 | mRNA_surveillance_pathway CAMTA Transcription_Regulator(from PlantTFDB) Ubiquitin_mediated_proteolysis defense response, |
| coexpression network | CFinderM001457 | mRNA_surveillance_pathway Diterpenoid_biosynthesis CAMTA Transcription_Regulator(from PlantTFDB) protein binding, mechanically-gated_ion_channel_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 180 | 462 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.