Annotation of co-expression genes

PH01004439G0140's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT5G58920 : 6.50E-31
Blast annotation: -

2.Location

Scaffold: PH01004439
Strand: -

RegionStartEnd
gene8814894211
mRNA8814894211
exon8814888516
exon9027390328
exon9103191185
exon9197492077
exon9321393405
exon9349894211
CDS8825088516
CDS9027390328
CDS9103191185
CDS9197492077
CDS9321393405
CDS9349893640

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.