PH01004449G0040's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G20800 : 1.00E-135
Blast annotation: Cell differentiation, Rcd1-like protein
2.Location
Scaffold: PH01004449
Strand: -
| Region | Start | End |
| gene | 17224 | 20694 |
| mRNA | 17224 | 20694 |
| exon | 17224 | 17453 |
| exon | 17575 | 17644 |
| exon | 17730 | 17920 |
| exon | 18497 | 18592 |
| exon | 18937 | 19043 |
| exon | 19148 | 19190 |
| exon | 19386 | 19475 |
| exon | 19720 | 19791 |
| exon | 20380 | 20694 |
| CDS | 17343 | 17453 |
| CDS | 17575 | 17644 |
| CDS | 17730 | 17920 |
| CDS | 18497 | 18592 |
| CDS | 18937 | 19043 |
| CDS | 19148 | 19190 |
| CDS | 19386 | 19475 |
| CDS | 19720 | 19791 |
| CDS | 20380 | 20583 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Rcd1-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04078.12 | Rcd1 | 49 | 307 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | CCR4-NOT transcription complex subunit 9 | ko03018 | K12606 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.