Annotation of co-expression genes

PH01004450G0140's details annotation

1.Annotation

ICBR annotation: ribosomal protein, putative, expressed

Blast result AT3G04400 : 4.40E-30
Blast annotation: Ribosomal protein L14p/L23e family protein

2.Location

Scaffold: PH01004450
Strand: -

RegionStartEnd
gene7856083610
mRNA7856083610
exon7856080079
exon8101181081
exon8118481363
exon8139981689
exon8285883610
CDS7959980079
CDS8101181081
CDS8118481363
CDS8139981689
CDS8285882992

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000632Zeatin_biosynthesis
NAC Transcription_Regulator(from PlantTFDB)
WRKY Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)WRKY
Transcription_Regulator(from PlantTFDB)WRKY

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00238.18Ribosomal_L1476147
PF03106.14WRKY225262

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0003735structural constituent of ribosome
GO:0005840ribosome
GO:0006355regulation of transcription, DNA-dependent
GO:0006412translation
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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