PH01004459G0060's details annotation
1.Annotation
ICBR annotation: ECT protein, putative, expressed
Blast result AT1G55500 : 8.10E-73
Blast annotation: evolutionarily conserved C-terminal region 4
2.Location
Scaffold: PH01004459
Strand: +
| Region | Start | End |
| gene | 69845 | 77736 |
| mRNA | 69845 | 77736 |
| exon | 69845 | 70139 |
| exon | 72030 | 72090 |
| exon | 72275 | 72342 |
| exon | 72782 | 73204 |
| exon | 73345 | 74208 |
| exon | 76030 | 76242 |
| exon | 76452 | 76628 |
| exon | 77231 | 77736 |
| CDS | 70029 | 70139 |
| CDS | 72030 | 72090 |
| CDS | 72275 | 72342 |
| CDS | 72782 | 73204 |
| CDS | 73345 | 74208 |
| CDS | 76030 | 76242 |
| CDS | 76452 | 76628 |
| CDS | 77231 | 77284 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001431 | |
| coexpression network | CFinderM001462 | ATP-dependent peptidase activity, cellular process, Endocytosis |
| coexpression network | CFinderM001685 | ARID Transcription_Regulator(from iTAK) NAD+ ADP-ribosyltransferase activity, |
| coexpression network | CFinderM001706 | GH35 Glycoside_Hydrolases ion transport, |
| coexpression network | CFinderM001709 | GH17 Glycoside_Hydrolases Arginine_and_proline_metabolism |
| coexpression network | CFinderM001751 | RLK-Pelle_LRR-II (from iTAK) Arginine_and_proline_metabolism ion transport, phospholipid transport, |
| coexpression network | CFinderM001827 | ARID Transcription_Regulator(from iTAK) GH17 Glycoside_Hydrolases Arginine_and_proline_metabolism ion transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04146.14 | YTH | 453 | 594 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.