PH01004483G0030's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01004483
Strand: +
| Region | Start | End |
| gene | 19454 | 25492 |
| mRNA | 19454 | 25492 |
| exon | 19454 | 20469 |
| exon | 20807 | 20956 |
| exon | 21470 | 21526 |
| exon | 22335 | 22622 |
| exon | 23188 | 23265 |
| exon | 24116 | 24184 |
| exon | 24267 | 24451 |
| exon | 25182 | 25492 |
| CDS | 19969 | 20469 |
| CDS | 20807 | 20956 |
| CDS | 21470 | 21526 |
| CDS | 22335 | 22622 |
| CDS | 23188 | 23265 |
| CDS | 24116 | 24184 |
| CDS | 24267 | 24451 |
| CDS | 25182 | 25209 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 359 | 411 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | THO complex subunit 4 | ko03041 | K12881 |
| RNA transport | THO complex subunit 4 | ko03013 | K12881 |
| mRNA surveillance pathway | THO complex subunit 4 | ko03015 | K12881 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.