PH01004500G0150's details annotation
1.Annotation
ICBR annotation: BURP domain containing protein, expressed
Blast result AT1G70370 : 7.00E-138
Blast annotation: polygalacturonase 2
2.Location
Scaffold: PH01004500
Strand: -
| Region | Start | End |
| gene | 86010 | 89572 |
| mRNA | 86010 | 89572 |
| exon | 86010 | 88124 |
| exon | 88475 | 89572 |
| CDS | 86832 | 88124 |
| CDS | 88475 | 88795 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000888 | phosphatidylinositol metabolic process, phosphatidylinositol phosphate kinase activity, Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system RLK-Pelle_LRR-VI-1 (from iTAK) 1-phosphatidylinositol-4-phosphate 5-kinase activity, cellular protein metabolic process, Phagosome Endocytosis ATP binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03181.14 | BURP | 325 | 534 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.