PH01004504G0130's details annotation
1.Annotation
ICBR annotation: ZF-HD homeobox protein, putative, expressed
Blast result AT1G74660 : 3.90E-22
Blast annotation: mini zinc finger 1
2.Location
Scaffold: PH01004504
Strand: +
| Region | Start | End |
| gene | 90811 | 95316 |
| mRNA | 90811 | 95316 |
| exon | 90811 | 92995 |
| exon | 93302 | 93375 |
| exon | 94978 | 95102 |
| exon | 95200 | 95316 |
| CDS | 92226 | 92995 |
| CDS | 93302 | 93375 |
| CDS | 94978 | 95102 |
| CDS | 95200 | 95316 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | zf-HD |
| Transcription_Regulator(from PlantTFDB) | ZF-HD |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04770.11 | ZF-HD_dimer | 60 | 112 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.