Annotation of co-expression genes

PH01004505G0040's details annotation

1.Annotation

ICBR annotation: alpha-N-acetylglucosaminidase, putative, expressed

Blast result AT5G13690 : 2.00E-133
Blast annotation: alpha-N-acetylglucosaminidase family / NAGLU family

2.Location

Scaffold: PH01004505
Strand: -

RegionStartEnd
gene2104427022
mRNA2104427022
exon2104421086
exon2136021771
exon2211922356
exon2296923213
exon2349823608
exon2395924233
exon2436724460
exon2508225129
exon2536525503
exon2556825598
exon2608527022
CDS2108221086
CDS2136021771
CDS2211922356
CDS2296923213
CDS2349823608
CDS2395924233
CDS2436724460
CDS2508225129
CDS2536525503
CDS2556825598
CDS2608526100

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Glycoside_HydrolasesGH89

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05089.11NAGLU5110
PF05089.11NAGLU169194
PF12972.6NAGLU_C203426
PF12972.6NAGLU_C449525

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycosaminoglycan degradationalpha-N-acetylglucosaminidase [EC:3.2.1.50]ko00531K01205

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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