Annotation of co-expression genes

PH01004505G0160's details annotation

1.Annotation

ICBR annotation: sulfate transporter, putative, expressed

Blast result AT1G23090 : 0.00E+00
Blast annotation: sulfate transporter 91

2.Location

Scaffold: PH01004505
Strand: -

RegionStartEnd
gene9020594702
mRNA9020594702
exon9020590303
exon9039290582
exon9067690962
exon9107191197
exon9143491583
exon9164591758
exon9302393088
exon9324493415
exon9353293739
exon9408994702
CDS9021690303
CDS9039290582
CDS9067690962
CDS9107191197
CDS9143491583
CDS9164591758
CDS9302393088
CDS9324493415
CDS9353293739
CDS9408994476

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00916.19Sulfate_transp96487
PF01740.20STAS539595

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008271secondary active sulfate transmembrane transporter activity
GO:0008272sulfate transport
GO:0015116sulfate transmembrane transporter activity
GO:0016020membrane
GO:0016021integral to membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.