PH01004528G0020's details annotation
1.Annotation
ICBR annotation: VHS and GAT domain containing protein, expressed
Blast result AT4G32760 : 9.90E-38
Blast annotation: ENTH/VHS/GAT family protein
2.Location
Scaffold: PH01004528
Strand: -
| Region | Start | End |
| gene | 14534 | 18676 |
| mRNA | 14534 | 18676 |
| exon | 14534 | 15520 |
| exon | 16054 | 16550 |
| exon | 16728 | 16907 |
| exon | 18165 | 18250 |
| exon | 18519 | 18676 |
| CDS | 14904 | 15520 |
| CDS | 16054 | 16550 |
| CDS | 16728 | 16907 |
| CDS | 18165 | 18250 |
| CDS | 18519 | 18569 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000026 | phosphatidylinositol_dephosphorylation GRF Transcription_Regulator(from PlantTFDB) hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, RLK-Pelle_LRR-Xb-1 (from iTAK) nucleus, |
| coexpression network | CFinderM000080 | DNA replication, synthesis of RNA primer, CBM43 Carbohydrate-Binding_Modules GH17 Glycoside_Hydrolases DNA primase activity, |
| coexpression network | CFinderM000558 | Whirly Transcription_Regulator(from PlantTFDB) COPII_vesicle_coating aminoacyl-tRNA hydrolase activity, intracellular, |
| coexpression network | CFinderM001058 | RLK-Pelle_URK-1 (from iTAK) NEK (from iTAK) |
| coexpression network | CFinderM001166 | DNA_replication Nucleotide_excision_repair Mismatch_repair Riboflavin_metabolism histone acetylation, chromatin modification, chromatin silencing at telomere, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03127.13 | GAT | 1 | 73 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0006886 | intracellular protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.