PH01004541G0060's details annotation
1.Annotation
ICBR annotation: disease resistance protein RGA3, putative, expressed
Blast result AT3G50950 : 2.10E-41
Blast annotation: HOPZ-ACTIVATED RESISTANCE 1
2.Location
Scaffold: PH01004541
Strand: +
| Region | Start | End |
| gene | 32518 | 36868 |
| mRNA | 32518 | 36868 |
| exon | 32518 | 35343 |
| exon | 35612 | 36564 |
| exon | 36600 | 36868 |
| CDS | 35068 | 35343 |
| CDS | 35612 | 36564 |
| CDS | 36600 | 36615 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000709 | ADP_binding defense response, RLK-Pelle_LRK10L-2 (from iTAK) tryptophanyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis tryptophan-tRNA ligase activity, cullin-RING ubiquitin ligase complex, regulation of ARF GTPase activity, |
| coexpression network | CFinderM000917 | defense response, Terpenoid_backbone_biosynthesis isopentenyl-diphosphate delta-isomerase activity, ADP_binding regulation of ARF GTPase activity, isoprenoid biosynthetic process, ARF GTPase activator activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 164 | 411 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.