PH01004541G0080's details annotation
1.Annotation
ICBR annotation: NBS-LRR disease resistance protein, putative, expressed
Blast result AT1G69550 : 1.30E-29
Blast annotation: disease resistance protein (TIR-NBS-LRR class)
2.Location
Scaffold: PH01004541
Strand: +
| Region | Start | End |
| gene | 53953 | 61414 |
| mRNA | 53953 | 61414 |
| exon | 53953 | 54845 |
| exon | 55228 | 56055 |
| exon | 56088 | 56904 |
| exon | 57254 | 57341 |
| exon | 57807 | 57913 |
| exon | 58314 | 58397 |
| exon | 59139 | 59755 |
| exon | 60020 | 60233 |
| exon | 60946 | 61059 |
| exon | 61233 | 61414 |
| CDS | 54067 | 54845 |
| CDS | 55228 | 56055 |
| CDS | 56088 | 56904 |
| CDS | 57254 | 57341 |
| CDS | 57807 | 57913 |
| CDS | 58314 | 58397 |
| CDS | 59139 | 59755 |
| CDS | 60020 | 60233 |
| CDS | 60946 | 61059 |
| CDS | 61233 | 61346 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000709 | ADP_binding defense response, RLK-Pelle_LRK10L-2 (from iTAK) tryptophanyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis tryptophan-tRNA ligase activity, cullin-RING ubiquitin ligase complex, regulation of ARF GTPase activity, |
| coexpression network | CFinderM000988 | ADP_binding defense response, tryptophanyl-tRNA aminoacylation, tryptophan-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00560.32 | LRR_1 | 937 | 957 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.