PH01004550G0080's details annotation
1.Annotation
ICBR annotation: leucine rich repeat protein, putative, expressed
Blast result AT2G34930 : 4.00E-148
Blast annotation: disease resistance family protein / LRR family protein
2.Location
Scaffold: PH01004550
Strand: -
| Region | Start | End |
| gene | 50725 | 53924 |
| mRNA | 50725 | 53924 |
| exon | 50725 | 53924 |
| CDS | 50861 | 53698 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 37 | 72 |
| PF13516.5 | LRR_6 | 109 | 123 |
| PF13855.5 | LRR_8 | 207 | 265 |
| PF00560.32 | LRR_1 | 282 | 304 |
| PF13855.5 | LRR_8 | 358 | 418 |
| PF13516.5 | LRR_6 | 672 | 684 |
| PF00560.32 | LRR_1 | 798 | 819 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.