Annotation of co-expression genes

PH01004568G0140's details annotation

1.Annotation

ICBR annotation: MGD2, putative, expressed

Blast result AT5G20410 : 4.00E-170
Blast annotation: monogalactosyldiacylglycerol synthase 2

2.Location

Scaffold: PH01004568
Strand: +

RegionStartEnd
gene7361177183
mRNA7361177183
exon7361174292
exon7444974732
exon7477074931
exon7502175162
exon7523475458
exon7557675638
exon7573775811
exon7613077183
CDS7396674292
CDS7444974732
CDS7477074931
CDS7502175162
CDS7523475458
CDS7557675638
CDS7573775811
CDS7613076390

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT28

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06925.10MGDG_synth89172
PF06925.10MGDG_synth203294
PF04101.15Glyco_tran_28_C353419

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycerolipid metabolism1,2-diacylglycerol 3-beta-galactosyltransferase [EC:2.4.1.46]ko00561K03715

10.Gene Ontology

GO AccessionGO Annotation
GO:0005975carbohydrate metabolic process
GO:0009247glycolipid biosynthetic process
GO:0016758transferase activity, transferring hexosyl groups
GO:0030246carbohydrate binding
GO:0030259lipid glycosylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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