PH01004584G0030's details annotation
1.Annotation
ICBR annotation: R-interacting factor 1, putative, expressed
Blast result AT5G06780 : 1.80E-35
Blast annotation: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
2.Location
Scaffold: PH01004584
Strand: -
| Region | Start | End |
| gene | 24035 | 30658 |
| mRNA | 24035 | 30658 |
| exon | 24035 | 24853 |
| exon | 25322 | 25385 |
| exon | 25457 | 25525 |
| exon | 25612 | 25854 |
| exon | 27191 | 27316 |
| exon | 27510 | 27561 |
| exon | 27982 | 28091 |
| exon | 28158 | 28399 |
| exon | 29533 | 30658 |
| CDS | 24738 | 24853 |
| CDS | 25322 | 25385 |
| CDS | 25457 | 25525 |
| CDS | 25612 | 25854 |
| CDS | 27191 | 27316 |
| CDS | 27510 | 27561 |
| CDS | 27982 | 28091 |
| CDS | 28158 | 28399 |
| CDS | 29533 | 29560 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001186 | Valine,_leucine_and_isoleucine_degradation Glycine,_serine_and_threonine_metabolism Zeatin_biosynthesis intramolecular transferase activity, phosphotransferases, oxoglutarate dehydrogenase (succinyl-transferring) activity, dihydrolipoyl dehydrogenase activity, sucrose synthase activity, thiamine pyrophosphate binding, oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_NAD(P)_as_acceptor oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, mitochondrial outer membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03735.13 | ENT | 53 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.