Annotation of co-expression genes

PH01004588G0070's details annotation

1.Annotation

ICBR annotation: galactosyltransferase, putative, expressed

Blast result AT1G05170 : 3.00E-140
Blast annotation: Galactosyltransferase family protein

2.Location

Scaffold: PH01004588
Strand: -

RegionStartEnd
gene6465070569
mRNA6465070569
exon6465065266
exon6550465556
exon6600166110
exon6621366338
exon6641266499
exon6727067390
exon6748767559
exon6773067793
exon6788468077
exon6818168233
exon6838668482
exon6972170569
CDS6506365266
CDS6550465556
CDS6600166110
CDS6621366338
CDS6641266499
CDS6727067390
CDS6748767559
CDS6773067793
CDS6788468077
CDS6818168233
CDS6838668482
CDS6972169860

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000899glucose-6-phosphate dehydrogenase activity,
glucose metabolic process,
galactosyltransferase activity,
NADP binding,
Glutathione_metabolism
Pentose_phosphate_pathway
Glycine,_serine_and_threonine_metabolism
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate
Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin
protein glycosylation,
phosphoserine phosphatase activity,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides,
chorismate mutase activity,
chorismate metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13334.5DUF409426115
PF01762.20Galactosyl_T149346

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006486protein glycosylation
GO:0008378galactosyltransferase activity
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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