PH01004589G0020's details annotation
1.Annotation
ICBR annotation: uncharacterized protein PA4923, putative, expressed
Blast result AT2G28305 : 6.70E-75
Blast annotation: Putative lysine decarboxylase family protein
2.Location
Scaffold: PH01004589
Strand: +
| Region | Start | End |
| gene | 11898 | 15149 |
| mRNA | 11898 | 15149 |
| exon | 11898 | 12257 |
| exon | 12769 | 12866 |
| exon | 12990 | 13120 |
| exon | 13739 | 13809 |
| exon | 13956 | 14129 |
| exon | 14967 | 15149 |
| CDS | 12108 | 12257 |
| CDS | 12769 | 12866 |
| CDS | 12990 | 13120 |
| CDS | 13739 | 13809 |
| CDS | 13956 | 14129 |
| CDS | 14967 | 15062 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03641.13 | Lysine_decarbox | 67 | 206 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.