PH01004621G0030's details annotation
1.Annotation
ICBR annotation: pleckstrin homology domain-containing protein, putative, expressed
Blast result AT5G19390 : 5.50E-42
Blast annotation: Rho GTPase activation protein (RhoGAP) with PH domain
2.Location
Scaffold: PH01004621
Strand: -
| Region | Start | End |
| gene | 16256 | 26559 |
| mRNA | 16256 | 26559 |
| exon | 16256 | 17892 |
| exon | 17967 | 18155 |
| exon | 18890 | 18956 |
| exon | 19284 | 19453 |
| exon | 19527 | 19640 |
| exon | 21728 | 21827 |
| exon | 21906 | 22078 |
| exon | 22304 | 22364 |
| exon | 22770 | 22819 |
| exon | 23025 | 23351 |
| exon | 24709 | 26559 |
| CDS | 17704 | 17892 |
| CDS | 17967 | 18155 |
| CDS | 18890 | 18956 |
| CDS | 19284 | 19453 |
| CDS | 19527 | 19640 |
| CDS | 21728 | 21827 |
| CDS | 21906 | 22078 |
| CDS | 22304 | 22364 |
| CDS | 22770 | 22819 |
| CDS | 23025 | 23351 |
| CDS | 24709 | 24798 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14389.5 | Lzipper-MIP1 | 265 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.